Suspension of GST registration: GSTN Communicates Data Mismatches to Taxpayers

Updated on: Jan 12th, 2022


2 min read

The GSTN has recently started sending out SMS to taxpayers informing them about discrepancies between the GST returns filed by them. According to the recent Notification 94/2020 dated 22nd December 2020, a new sub-rule 2A has been inserted in Rule 21A of the Central Goods and Services Tax (CGST) Rules. Any significant differences or anomalies observed between the GSTR-3B and the GSTR-1/2B could lead to suspension of GST registration. Further, if these differences remain unexplained, the GSTIN could get cancelled.

Besides, if the taxpayer has applied for cancellation, the tax officer can suspend the registration till cancellation proceedings are completed as per the provisions of new Rule 21A as introduced by notification 94/2020.

What is meant by suspension of GST registration?

The government has come up with a new concept of suspension of GST registration. Rule 21A has been inserted into the CGST Rules 2019. With the introduction of this rule, a taxpayer who has applied for cancellation of GST registration will not be required to comply with GST return filing provisions during the suspension period.

Whose GST registration or GSTIN can get suspended?

The GSTIN of a registered person can be cancelled only by a proper officer if he has a reason to believe that the registration needs to be cancelled. The proper officer must give the registered person a reasonable opportunity of being heard and then follow the appropriate procedure for cancellation as mentioned under Rule 22 of the CGST Rules 2017.

During the period in which such cancellation proceedings are being carried out, the proper officer can suspend the registration.

Suspension of registration due to differences between GST returns:

Rule 21A(2A): A new sub-rule 2A has been inserted via notification 94/2020 which states that if a proper officer finds any discrepancies:

  1. On comparing details of outward supplies furnished under Form GSTR-1 and Form GSTR 3B
  2. On comparing details of inward supplies reflecting in the Form .GSTR-2B with the Form GSTR-3B
  3. Any other analysis

He can issue form GST REG-31 for intimating such discrepancies to the taxpayer. He will also mention that if a proper explanation is not provided on these discrepancies, the registration may get cancelled.

He can also suspend the registration as per Rule 21A(2A) with effect from the date of this communication to the taxpayer. Further, the proper officer can lift the suspension on receiving a satisfactory reply from the taxpayer.

This provision related to the suspension of GST registration till cancellation was welcomed by the taxpayers as it reduced the compliance burden of the taxpayers till the completion of cancellation proceedings.

What is the period of suspension of GST registration?

The suspension of GST registration will be effective from the date the registered person has applied for the cancellation of GST registration. The effective date of suspension is the later of the following:

  • Date of submission of registration cancellation application
  • Date from which the cancellation is sought

Effect of suspension of GST registration

A person whose registration has been suspended:

  1. Cannot make any taxable supply after suspension.
  2. Is not required to file any returns as required under section 39 of the Central Goods and Service Tax Act, 2017. Reduction in compliance burden is the main benefit enjoyed by the taxpayer until the suspension of GST registration.

How to revoke the suspension of GST registration?

The suspension of GST registration can be revoked after the completion of GST registration cancellation proceedings. The revocation of suspension of GST registration will be effective from the date the suspension has come into effect.

How can ClearTax help?

ClearTax GST will help you-

  1. Get the GSTR-3B auto-populated from the GSTR-1 and 2B, with an option to edit the values
  2. Check the eligible ITC as per Rule 36(4) in seconds
  3. Access insightful reports between GSTR-3B and 1, GSTR-3B and 2B, and much more, with a click of a button
  4. Get access to 50+ in-built validations to help the accurate ingestion of data, and help you file your GST returns without a single error.
  5. Claim 100% accurate ITC with our Advanced Reconciliation Tool, without missing out on a single invoice. You can also get-
    • A single-click import of the purchase data from Tally software
    • In-built validations for accurate upload of the purchase data
    • Advanced filters and excel report summary to take actions and maximise ITC claims
    • Supplier-level invoice mismatches can be identified for taking corrective actions
    • Comparison report GSTR-2B versus GSTR-3B

Avoid receiving messages from the GSTN and avoid demand notices, with ClearTax GST!

inline CTA
India’s Fastest and Most Advanced 2B Matching
Maximise ITC claims, use smart validations to correct your data and complete 2B matching in <1 minute

Pay taxes with your Mastercard credit card & enjoy benefits such as

  • Interest free credit period
  • Easy EMI conversions
  • Earn reward points
Use code: CTMASTER For Additional 10% Off!

*T&C apply disclaimer


Clear offers taxation & financial solutions to individuals, businesses, organizations & chartered accountants in India. Clear serves 1.5+ Million happy customers, 20000+ CAs & tax experts & 10000+ businesses across India.

Efiling Income Tax Returns(ITR) is made easy with Clear platform. Just upload your form 16, claim your deductions and get your acknowledgment number online. You can efile income tax return on your income from salary, house property, capital gains, business & profession and income from other sources. Further you can also file TDS returns, generate Form-16, use our Tax Calculator software, claim HRA, check refund status and generate rent receipts for Income Tax Filing.

CAs, experts and businesses can get GST ready with Clear GST software & certification course. Our GST Software helps CAs, tax experts & business to manage returns & invoices in an easy manner. Our Goods & Services Tax course includes tutorial videos, guides and expert assistance to help you in mastering Goods and Services Tax. Clear can also help you in getting your business registered for Goods & Services Tax Law.

Save taxes with Clear by investing in tax saving mutual funds (ELSS) online. Our experts suggest the best funds and you can get high returns by investing directly or through SIP. Download Black by ClearTax App to file returns from your mobile phone.

Cleartax is a product by Defmacro Software Pvt. Ltd.

Company PolicyTerms of use


ISO 27001

Data Center


SSL Certified Site

128-bit encryption