Order of Utilisation of Input Tax Credit Under GST

By AJ

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Updated on: Jul 1st, 2025

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5 min read

Input Tax Credit (ITC) utilisation under GST follows a specific order mandated by the Central Goods and Services Tax (CGST) Act, 2017. The government introduced structured rules through Sections 49A, 49B, and Rule 88A to ensure systematic utilization of ITC across IGST, CGST, and SGST categories. Understanding these ITC utilisation rules is crucial for businesses to optimise cash flow, minimise working capital requirements, and ensure GST compliance. 

This article explains the mandatory order of ITC utilisation, recent amendments, and best practices for efficient ITC management.

Latest Updates
Budget 2025
1st February 2025
1. Amendments in Section 34 of the CGST Act, 2017: The FM amended the Proviso to sub-section (2) to explicitly provide for the requirement of reversal of corresponding ITC in respect of a credit-note. It means if the supplier issues a credit note to reduce their tax liability, the recipient must reverse the corresponding ITC, if already availed. 

2. Amendments in Section 38 of the CGST Act, 2017: Section 38(1) is being amended to omit the expression "auto-generated" indicating that the ITC statement i.e. GSTR-2B may no longer be entirely system-generated. Businesses may now need to validate and reconcile invoices and ITC through the Invoice Management System (IMS) rather than relying solely on system-generated data. Also, a new clause (c) to sec 38(2) is added, allowing the government to specify additional details in the ITC statement through rules.

8th October 2024

Section 128A of the CGST Act waived off interest and penalties for certain non-fraudulent ITC claims from prior years (2017-2020). This waiver is effective through Notification No. 21/2024 issued on 8th October 2024. It applies under strict conditions but excludes erroneous refunds so as to streamline the ITC claim process while promoting compliant reporting.

The Amended Law on Order of ITC Set-Off

CGST Circular No. 98/17/2019 was issued on 23 April 2019 has clarified the order of ITC utilisation for each tax head. It further stated that until the Rule 88A of the CGST Rules was implemented on the GST portal, taxpayers had to follow the facility available on the GST portal up to July 2019. The facility was made available from July 2019 returns onwards. 

Firstly, let’s take a look at the two sections inserted in the CGST Act- 

Section 49A: Notwithstanding anything contained in section 49, the input tax credit on account of central tax, State tax or Union territory tax shall be utilised towards payment of integrated tax, central tax, State tax or Union territory tax, as the case may be, only after the input tax credit available on account of integrated tax has first been utilised fully towards such payment. 

Section 49B: Notwithstanding anything contained in this Chapter and subject to the provisions of clause (e) and clause (f) of sub-section (5) of section 49, the Government may, on the recommendations of the Council, prescribe the order and manner of utilisation of the input tax credit on account of integrated tax, central tax, State tax or Union territory tax, as the case may be, towards payment of any such tax”.

Subsequently, the rule 88A has been inserted to notify the above new provision via CT notification no. 16/2019 dated 29th March 2019. 

Rule 88A: Order of utilisation of input tax credit:- Input tax credit on account of integrated tax shall first be utilised towards payment of integrated tax, and the amount remaining, if any, may be utilised towards the payment of central tax and State tax or Union territory tax, as the case may be, in any order. Provided that the input tax credit on account of central tax, State tax or Union territory tax shall be utilised towards payment of integrated tax, central tax, State tax or Union territory tax, as the case may be, only after the input tax credit available on account of integrated tax has first been utilised fully.

As per the Circular No: 98/17/2019 dated 23 April 2019, it has been clarified that- As per the provisions of Section 49 of the CGST Act, credit of integrated tax has to be utilised first for payment of integrated tax, then Central tax and then State tax, in that order mandatorily. 

This led to a situation, in certain cases, where a taxpayer has to discharge his tax liability on account of one type of tax (say State tax) through electronic cash ledger, while the input tax credit on account of other types of tax (say Central tax) remains unutilised in electronic credit ledger.

The newly inserted rule 88A in the CGST Rules allows utilisation of input tax credit of integrated tax towards the payment of Central tax and State tax, or as the case may be, Union Territory tax, in any order subject to the condition that the entire input tax credit on account of integrated tax is completely exhausted first before the input tax credit on account of Central tax or State/Union Territory tax can be utilised.

It is clarified that after the insertion of the said rule, the order of utilisation of input tax credit will be as per the below order:

ITC typeFirst utilisationSecond utilisationRestrictions
IGST ITCIGST liabilityCGST/ IGST liabilityIGST ITC must be completely exhausted 
CGST ITCIGST liabilityCGST liabilityCan not be utilised for SGST/ UTGST liability
SGST/ UTGST ITCIGST liabilitySGST/ UTGST liabilityCan not be utilised for CGST liability

With the new rules in place, it is mandatory to utilise the entire IGST available in electronic credit ledger before utilising ITC on CGST or SGST. The order of setting off ITC of IGST can be done in any proportion and any order towards setting off the CGST or SGST output after utilising the same for IGST output.

ITC Utilisation Method

What is the Maximum ITC that can be utilised to pay GST liability?

From 1st January 2021, certain taxpayers cannot utilise the ITC balance available in the electronic credit ledger to discharge more than 99% of the tax liability for a tax period. It means at least 1% of tax liability must be paid by cash.

It applies to such taxpayers who have monthly value of taxable supplies more than Rs.50 lakh (not being exempt or zero-rated supplies). The following taxpayers are exempted from this restriction:

  • A registered taxpayer where more than Rs.1 lakh is paid as income tax in the last two FY in belated IT returns of himself or his proprietor or any two partners or managing director, trustee or board, etc.
  • A registered taxpayer who has received more than Rs.1 lakh as refund of unutilised input tax credit under GST, on account of sero-rated supplies without payment of tax or inverted tax structure.
  • A registered taxpayer paid more than 1% of his GST liability using only his electronic cash ledger, for all the tax periods in the current FY so far.
  • Government departments, PSU, local authorities, statutory bodies, etc.

For information about implications, read our article on ‘All about Rule 86B‘.

How does ClearTax help in ITC Optimisation?

Clear GST software is equipped for optimum ITC utilisation. With Clear, know the exact amount of ITC to be utilised under each of the tax head -CGST, SGST and UTGST. Clear automatically computes the tax payable during the month or quarter by first considering ITC of IGST before moving onto CGST or SGST. Balance ITC available under CGST and SGST/UTGST shall be allocated optimally to help you get maximum benefit. It ultimately keeps your cash outflow minimum possible.

Let’s understand the impact of New Rule with the help of an illustration: Suppose, Mr. X has the following liability and input tax credit for the period are as follows:

ITC Optimisation

Let’s see how the ITC of IGST can be utilised in different ways from the following 2 scenarios:

Scenario 1: Set-off of unutilised IGST credit completely towards CGST

Set-off of unutilised IGST credit

Scenario 2: Set-off of unutilised IGST credit partly towards CGST and SGST liability as optimised by Clear

Set-off of unutilised IGST credit partly towards CGST and SGST liability

*Note: In this illustration, we came up with only two scenarios whereas the law does not place any strict rule of attributing entire unutilised IGST credit wholly to either CGST or SGST liability. A taxpayer can utilise IGST credit in any proportion and in any order, but the condition is to completely utilise the IGST credit before using CGST or SGST credit. Hence, in the above illustration, ClearTax helps optimise the ITC for you and also the cash to be paid was reduced   

The table below highlights the differences in the order of ITC utilisation between the old system and the new system- As per the old set-off rules, the following is the order and priority for ITC utilisation–

Liability of →IGSTCGSTSGST
ITC of↓   
IGST123
CGST21Not permitted
SGST2Not permitted1

From July 2019 onwards the below mode of off-set functionality has been made available, the following is the order and priority for ITC utilisation

Liability of →IGSTCGSTSGST
ITC of↓   
IGST12* 
CGST43Not permitted
SGST6Not permitted5

 *The order of utilisation of IGST credit post offset to IGST liability can be in any order or proportion between CGST/SGST but the only pre-condition is exhausting IGST completely before using other credits. Hence, from the above table for new rules, it can be concluded that any taxpayer must begin with set-off process starting with ITC of IGST and utilise it completely before proceeding to utilise the ITC of CGST or ITC of SGST.  

Illustrations on How GST Set-Off Works

Let us discuss the applicability of provisions using two illustrations. 

Illustration I: To understand the order of IGST credit set-off 

There is an only procedural change in utilising IGST credit. To understand the set-off from a practical perspective, let us take an example. Suppose, Mr X has the following GST liabilities and GST inputs.

(all figures in INR)

Type of GSTOutput LiabilityInput Tax Credit
IGST5002000
CGST1000150
SGST/ UTGST1000150
Total25002300

As per the existing system, the set-off takes place as follows-

(all figures in INR)

Type of TaxLiabilityCredit AvailableSet-off of LiabilityBalance to be paid in cashBalance credit available
IGST5002,000500  (from IGST)__
CGST1,000150150 (from CGST) 
850 (from IGST)
SGST/ UTGST1,000150150 (from SGST) 
650 (from IGST)
200

You can see that CGST or SGST payable needs to be paid first with CGST credit or SGST credit respectively.  

However, as per the new procedure of set-off, the IGST credit available will need to be set-off and the following are the three possible ways in which this can be done-

 Scenario 1: Set off of unutilised IGST credit completely towards CGST

(all figures in INR)

Type of TaxLiabilityCredit AvailableSet-off of LiabilityBalance to be paid in cashBalance credit available
IGST5002,000500  (from IGST)__
CGST1,0001501000* (from IGST)150
SGST/ UTGST1,000150500 (from IGST) 
150 (from SGST)
350

Scenario 2: Set off of unutilised IGST credit completely towards SGST

(all figures in INR)

Type of TaxLiabilityCredit AvailableSet-off of LiabilityBalance to be paid in cashBalance credit available
IGST5002,000500  (from IGST)__
CGST1,000150500 (from IGST)   
150 (from CGST)
350_
SGST/ UTGST1,0001501000* (from IGST)150

Scenario 3: Set-off of unutilised IGST credit partly towards CGST & SGST liability in an equal proportion

(all figures in INR)

Type of TaxLiabilityCredit AvailableSet-off of LiabilityBalance to be paid in cashBalance credit available
IGST5002,000500  (from IGST)__
CGST1,000150750* (from IGST)   
150 (from CGST)
100_
SGST/ UTGST1,000150750* (from IGST) 
150 (From SGST)
100_

*Note:In this illustration, we came up with only three scenarios, whereas the law does not place any strict rule of attributing entire unutilised IGST credit to CGST or SGST liability.

A taxpayer can utilise IGST credit in any proportion and in any order, but the condition is to completely utilise the IGST credit before using CGST or SGST credit. So as you can see in the example, IGST credit has been utilised first as per the new system of set-off, only after which, can CGST or SGST/UTGST be set-off. To optimise credit utilisation it is advisable to follow Scenario 3. 

Illustration II: To understand business Impact due to the new rule 

From the illustration 1, we can observe that the overall GST output liability was higher than the overall GST input and now we are going to see a case where overall GST input is higher than the overall GST output. Suppose, Mr X has the following liability and input credit for a tax period as follows-

(all figures in INR)

Type of GSTOutput LiabilityInput Tax Credit
IGST5001,000
CGST500300
SGST/ UTGST500300
Total15001600

Let us see how the ITC of IGST can be utilised in different ways from the following three scenarios: 

Scenario 1: Set off of unutilised IGST credit completely towards CGST

(all figures in INR)

Type of GSTLiabilityCredit availableSet-off of liabilityBalance to be paid in cashBalance credit available
IGST5001,000500 (From IGST)
CGST500300500* (From IGST)300
SGST/ UTGST500300300 (From SGST/ UTGST)200

Scenario 2: Set off of unutilised IGST credit completely towards SGST

(all figures in INR)

Type of GSTLiabilityCredit availableSet-off of liabilityBalance to be paid in cashBalance credit available
IGST5001,000500 (From IGST)
CGST500300300 (From CGST)200
SGST/ UTGST500300500* (From IGST)300

Scenario 3: Set-off of unutilised IGST credit partly towards CGST & SGST liability in an equal proportion

(all figures in INR)

Type of GSTLiabilityCredit availableSet-off of liabilityBalance to be paid in cashBalance credit available
IGST5001,000500 (From IGST)
CGST500300250* (From IGST)   
250 (From CGST)
50
SGST/ UTGST500300250* (From IGST)   
250 (From SGST)
50

*Note: In this illustration, we came up with only three scenarios whereas the law does not place any strict rule of attributing entire unutilised IGST credit wholly to either CGST or SGST liability.

A taxpayer can utilise IGST credit in any proportion and in any order, but the condition is to completely utilise the IGST credit before using CGST or SGST credit. In the first two scenarios, the taxpayer has to pay either CGST or SGST and either there is a balance of CGST credit or SGST credit lying in Electronic Credit Ledger (ECL) respectively.

But if the taxpayer follows scenario 3, there is no need for a cash payment of either CGST or SGST liability and he can also carry forward an equal amount of CGST and SGST in ECL so that in succeeding months if the purchase or sales pattern changes from inter-state to intra-state or vice-versa, retaining an equal balance in both the ledgers will help optimising the utilisation of credits in future as well. This measure has to be carefully monitored.

Impact on Business

The amended GST offset rules mandates for complete utilisation of IGST input credit before using the CGST or SGST input credit. In illustration 2 we can observe that the taxpayer has a higher credit due to interstate purchases when compared to the intrastate purchase. In turn, the sales are more within the state when compared to outside the state. It leads to the accumulation of more IGST input credit. Accordingly, if this is not properly utilised it may lead to blockage of working capital.

If the taxpayer follows either of the scenario 1 or 2 in the illustration II, they are evidently deferring the respective CGST or SGST credits balance (as the case may be) to be utilised over several tax periods. It results in blockage of working capital for a considerable period of time. 

Alternatively, the taxpayer should wait for a future day where his interstate sales (IGST liability) are higher than intrastate sales to completely utilise the balance credit of CGST or SGST brought forward. If the taxpayer goes with scenario 3 by utilising available credit in equal proportion of CGST and SGST, he can avoid the payment of tax and the blockage of working capital that can follow. However, from the government’s point of view, the new provision is an immediate measure to allow smooth distribution of IGST revenue. 

Takeaway: The GST portal allows taxpayers to manually set off the input tax credit against the output liabilities. It is advisable that the taxpayers make optimum utilisation of ITC available to them by careful allocation of credits every tax period. The new off-set mechanism in no way leads to additional working capital requirements compared to the old mechanism if properly optimised. 

Further in case of carrying forward credits it is very much advisable to strike a balance & retain equal credits in both CGST and SGST/UTGST ledgers for optimising credits in future as well. The easiest way to accomplish this is after using the IGST credits for the IGST liability, the balance available in IGST credits to be equally utilised for CGST/SGST credits. If businesses have missed out doing it in the last two months in the next month they can optimise on it to arrive at an equal balance in both CGST/SGST credit ledgers in case of excess ITC availability and continue the same henceforth.

Frequently Asked Questions

What is the order of utilisation of ITC under GST?

The ITC utilisation order prescribed under Rule 88A of CGST Rules is:

  • IGST ITC first against IGST liability
  • Remaining IGST ITC against CGST/SGST/UTGST liabilities in any order
  • CGST ITC against CGST liability (after IGST exhaustion)
  • SGST ITC against SGST/UTGST liability (after IGST exhaustion)
What is the rule of ITC credit utilisation?

ITC utilisation follows Rule 88A that mandates:

  • Mandatory exhaustion of IGST ITC before utilising CGST/SGST/UTGST ITC
  • Flexibility in allocating remaining IGST ITC between CGST and SGST
  • Sequential processing ensuring IGST priority in all scenarios
  • Requirement of minimum 1% liability payment in cash (large taxpayers under Rule 86B)
What is the time limit for ITC utilisation?

The time limit applies to claiming/availing ITC, which is 30th November of following financial year or annual return filing date (whichever is earlier).

Which tax credit should be utilised first as per GST rules?

IGST credit must be utilised completely first as per Section 49A and Rule 88A.

Is it mandatory to follow the order of ITC utilisation under GST?

Yes, it is mandatory for businesses to follow the prescribed order under Rule 88A. 

About the Author
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AJ

Manager - Content
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As a qualified Chartered Accountant with extensive expertise in accounting, finance, taxes, and audit, I specialise in simplifying complex regulations for a broader audience. Well-versed in tax laws across India and the GCC region, I have a keen interest in the evolving finance ecosystem. Passionate about learning, I enjoy engaging in conversations, exploring new cultures through travel, and unwinding with music.. Read more

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