GST Payment Online – How to Make GST Challan Payment Online?

By Annapoorna

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Updated on: Aug 28th, 2025

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6 min read

GST Payment Online is a digital method by which taxpayers settle their GST dues either by depositing cash into the electronic cash ledger and/or by offsetting their input tax credits. This article explains the entire process with detailed steps, payment modes, due dates, and tips for a smooth transaction.  

Key Takeaways  

  • GST Payment involves depositing tax dues after adjusting available input tax credits.  
  • Different categories of taxpayers have similar though well-defined processes for payment of GST.  
  • Payment can be made online or offline by generating a GST challan.
  • The mode you choose will affect timing and processing.
  • Late payment attracts interest and penalties.

What is GST Payment?  

GST Payment is the process by which businesses and taxpayers deposit their tax liability into the government’s electronic cash ledger. This is done after offsetting the input tax credits and generating a GST challan. In effect, it ensures tax compliance and timely remittance of GST dues.

Who Should Pay GST?  

  • Registered businesses and service providers under the GST regime
  • Importers and exporters, as applicable
  • Taxpayers who fall under prescribed turnover or threshold limits
  • Taxpayers with nil GST returns may not need to make any payment if there is no tax liability

GST Payment Process  

  1. Assess your tax liability after adjusting input tax credits.  
  2. Determine if additional cash is required in the electronic cash ledger.  
  3. Generate a GST challan either before or after logging into the GST portal or while filing GSTR-3B.  
  4. Choose an online or offline mode of payment by selecting the appropriate option in the challan.  
  5. Complete payment following the steps provided for net banking, debit/credit card, UPI, or offline modes like OTC/NEFT/RTGS.  
  6. Once paid, the electronic cash ledger is updated, and you may track the transaction via the GST portal.

GST Payment for Different Taxpayers  

The GST payment process remains largely uniform, with slight nuances for various categories:  

1. Regular Taxpayers  

  • Must use the PMT-06 challan while filing GSTR-3B  
  • Can generate a challan before login, after login, or directly while filing returns  
  • Payment details appear in the GSTR-3B filing  

2. Quarterly Taxpayers (QRMP Scheme)  

  • Taxpayers who have opted into the QRMP scheme under GST, must deposit tax for the first two months of the quarter directly using PMT-06 by the 25th of the following month. 
  • In the third month, when the quarterly return is filed, if there is any shortfall (typically reflecting the liability for that month), it must be paid on or before the due date.

3. Taxpayers Filing Nil GST Returns  

  • Who have no sales/purchases or tax liability 
  • Do not use a challan or make any payment for that period  

4. Composition Taxable Persons  

  • Must summarize quarterly turnover details in challan CMP-08 and remit the applicable tax on or before the 18th of the month succeeding the quarter.

How to Generate a GST Challan on the GST Portal?  

There are two primary methods to generate your GST challan for payment:  

Before Logging In:  

  • Go to the GST portal homepage and navigate to Services > Payments > Create Challan.
  • Input your GSTIN (or temporary user/return preparer ID) and the captcha code.  
  • Enter the tax amounts for CGST, SGST, IGST, etc., and select your desired payment mode (with bank details if applicable).  
  • Re-enter your GSTIN in the designated field and click on “PROCEED”.  
  • Click “DOWNLOAD” to save the generated challan copy.

After Logging In:  

  • After signing in to your GSTIN account, find the “Create Challan” button on your dashboard.  
  • Fill in the required tax details, select the preferred payment mode, and generate the challan.  
  • The subsequent steps are similar to pre-login generation.

Methods for Making GST Payment  

Online Payments  

Online payment is made through internet banking and includes:  

  • Net banking  
  • Debit card/credit card (Note: Some cards may not be activated)  
  • Immediate Payment Services (IMPS)
  • Unified Payment Interface (UPI)

Important Notes for Online Payments:  

  • Transactions made online update the electronic cash ledger automatically.  
  • Payment via online modes can be made with or without logging into the GST portal (depending on the selected payment option).  
  • Only a select list of banks is allowed for these transactions.

Offline Payments  

For those opting for offline payment modes, the available options include:  

  • Over the counter (OTC) using Cheque/Demand Draft/Cash (max limit of Rs 10,000)  
  • NEFT or RTGS where a printed GST challan is used along with a bank mandate and instrument details  

Important Notes for Offline Payment:  

  • If your bank does not appear in the net banking list, you may opt for offline methods.  
  • You must print the generated challan, manually fill in the necessary depositor and instrument details, sign, and submit it to the bank.  
  • For RTGS/NEFT, after bank processing and receiving the Unique Transaction Reference (UTR), you must log in to link this UTR number against the respective challan.

GST Payment Due Date for Different Taxpayers

  • Regular taxpayers: GST payment is due by the 20th day of the next month following the tax period.
  • Composition scheme taxpayers: GST payment is due by the 18th day of the month succeeding the quarter.
  • QRMP scheme taxpayers: They file GSTR-3B quarterly by the 22nd or 24th day of the month following the end of the quarter (depending on the state); tax payment for the first two months of the quarter is due by the 25th of the following month via FORM GST PMT-06.

What is the Time Limit to Complete GST Payment?

The time limit to complete payment after creating a GST challan is 15 days from the date of challan generation. The challan (CPIN) is valid only for this period. If payment is not made, the challan automatically expires, and the taxpayer will need to generate a new challan for making the payment.

For challans generated without logging into the GST portal and using net banking, payment should be done immediately. 

How to Pay GST Offline  

Over the Counter (OTC):  

Step 1: Manually fill in depositor details and sign where required on the printed challan.  

Step 2: Submit the challan along with your cheque, demand draft, or cash to the designated bank branch.  

Step 3: The bank processes the payment within one to two days, updating the ledger subsequently.  

RTGS/NEFT:  

Step 1: On the printed challan, fill in the bank mandate details along with necessary cheque or account debit details and sign.  

Step 2: Submit the filled details and supporting documents to the bank.  

Step 3: Once processed (usually within a couple of hours), the bank issues a Unique Transaction Reference (UTR) number.  

Step 4: Log in to the GST portal, navigate to challan history, click on the appropriate CPIN, and link the UTR number to update the ledger.

 

Steps to Complete GST Payment at a Later Date  

If you generate a challan and complete the payment later, here’s what to do:

For Net Banking or Card Payments:  

  • Log in to the GST portal and go to Services > Payments > Challan History.  
  • Click the hyperlink beside your CPIN, select the bank, and complete the transaction.  
  • Once confirmed, the receipt containing CIN is generated and the ledger updates immediately.

For OTC (Offline Mode):  

  • On the printed challan, fill in any missing details (such as instrument details) and sign.  
  • Submit the challan along with cash, cheque, or DD to the designated bank branch.  
  • The bank processes the transaction in one to two days, after which the ledger is updated.

For RTGS/NEFT:  

  • Complete the mandate by recording necessary depositor, cheque, or account details and sign the document.  
  • Submit the prints along with the challan at the bank.  
  • After receiving the UTR number, log in to the GST portal, find your CPIN under challan history, and link the UTR to the challan.

Always verify if your payment status is “Awaiting Bank Confirmation” or similar. If payment is confirmed by your bank but the electronic cash ledger is not updated, file a grievance using Form PMT-07 on the GST portal.

GST Payment Forms  

PMT-06: The common GST challan form for most online and offline payments.  

CMP-08: Used primarily by composition taxable persons to report turnover and pay the requisite tax.  

Always ensure you use the correct form for your tax category and payment type.

How to Track GST Payment Status  

  • Visit the GST portal go to Services > Payments > Track Payment Status either, “Before Logging In” or “After Logging In” based on your method.  
  • Enter your GSTIN and CPIN to track your transaction’s status.  
  • Alternatively, check your bank’s online transaction history to confirm that the payment is processed.  

This simple step helps you verify successful updates to your electronic cash ledger.

Interest on Late Payment of GST  

If you fail to pay or file returns by the due date, interest is levied at 18% p.a. for every day of delay on the outstanding tax liability. In addition to interest, late fees and penalties may also be imposed until the payment is completed. Always aim to complete your payment within the prescribed timeframe to avoid extra charges.

Frequently Asked Questions

What is a GST payment?

All GST registered taxpayers have to pay GST on sales after deducting eligible ITC while filing GST returns.

How do I make a GST payment?

You can make a GST payment either online or offline at your convenience. You can go through Which mode to choose for making a GST payment? section of this article for more details.

What are CGST, SGST and IGST?

CGST stands for Central GST and is charged by the Central Government, whereas SGST stands for State GST and is charged by the respective state government. CGST & SGST will be charged on sales within a state. IGST stands for Integrated GST and is charged by the Central government on sales between states/UTs.

How do I check my GST payment status?

You can check your GST payment status after logging into the portal using the path below:  
Services > Payments > Track Payment Status

What is the link for GST payment?

You can make GST payment using https://payment.gst.gov.in/payment/

Can we pay GST using a debit/credit card?

Yes, you can pay GST using a debit/credit card. The portal has now activated this option.

What is the time limit for GST payment

The time limit for GST payment is the same as the due date of filing GSTR-3B, i.e., 20th of every month or the month following the quarter, for monthly and quarterly filers respectively.

What are the methods of payment of GST

The various methods of payment of GST include Net banking, Debit card/credit card, Immediate Payment Services (IMPS) and Unified Payment Interface (UPI).

How to fill form GST PMT 06 payment challan

Visit the GST portal. Navigate to Services > Payments > Create challan. Select the monthly payment for quarterly return as the reason for generating the challan if the taxpayer is in the QRMP scheme. However, if taxpayer is not in the QRMP scheme, one can select any other payment to create the challan.

What is the penalty for GST late payment

The penalty for GST late payment is interest at 18% p.a. for every day of delay till the GST is paid and return is filed. For details, read our article. 

Is it possible to deposit many challans with a single cheque?

No, a separate cheque or Demand Draft (DD) has to be issued for each and every challan separately.

Can a taxpayer pay GST through cash? Is there any limit on cash transactions allowed?

Yes, a taxpayer can pay GST through cash i.e. Over The Counter (OTC). The maximum amount that any taxpayer can pay through the OTC is Rs 10,000. If the payable amount exceeds this limit, then the taxpayer must go for other modes.

What is the validity of a challan?

CPIN or Common Portal Identification Number is created for every Challan successfully generated by the taxpayer. The validity period for a CPIN is 15 days. One cannot make GST payment once a CPIN expires. 

What should I do if my GST payment fails or shows as pending?

If your GST payment fails or remain pending, after verifying the payment status by visiting the ‘challan history', taxpayer can contact their bank account and obtain the transaction number if the amount had got debited from the account. If the issue still remains unresolved, taxpayer can file grievance on the GST portal through Grievance against Payment (GST PMT-07).

What should I do if I made an excess GST payment?

The excess GST payment will get reflected in taxpayer's electronic cash ledger which can be further utilised for making the GST payments of later month. Alternatively, one can apply for refund by filing Form GST RFD-01 on the GST portal.

What is an e-Challan?

e-Challan is the PMT-06 challan which a taxpayer uses for making any GST payment towards the electronic cash ledger, around the time of filing GSTR-3B.

About the Author
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Annapoorna

Assistant Manager - Content
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I preach the words, “Learning never exhausts the mind.” An aspiring CA and a passionate content writer having 4+ years of hands-on experience in deciphering jargon in Indian GST, Income Tax, off late also into the much larger Indian finance ecosystem, I love curating content in various forms to the interest of tax professionals, and enterprises, both big and small. While not writing, you can catch me singing Shāstriya Sangeetha and tuning my violin ;). Read more

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