What Happens if GSTR-9 is Wrongly Filed? Can GSTR-9 Be Revised After Filing?

By Annapoorna

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Updated on: Dec 26th, 2025

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2 min read

Filing GSTR-9 correctly is critical because it is a non-revisable, summary return that consolidates an entire year’s GST data. If GSTR-9 is filed wrongly, whether due to schema validation errors, wrong figures or missed disclosures, it can lead to mistakes, penalties, interest exposure and additional cash outflows. In this article, we'll delve into what happens if you file a GSTR-9 incorrectly. Also, we'll discuss why the sche­ma validation error code appears while filing GSTR-9 and give you solutions if schema validation failed­ in GSTR 9. 

Key Takeaways

  • The GST law does not allow any revision of GSTR-9. Once filed, it is treated as final for that financial year. 
  • Incorrect figures in GSTR-9 (turnover, tax, ITC, HSN, RCM) can trigger GST notices, audit queries and potential demands, especially where they do not match GSTR-1, GSTR-3B, GSTR-2B and books.
  • Late filing or non-filing of GSTR-9 attracts late fees, in addition to interest on any unpaid tax liability.
  • Wrongly claimed ITC or missed reversals cannot be “fixed” inside GSTR-9; such corrections generally require payment or reversal via GSTR-3B/DRC-03.
  • Preventing errors through robust reconciliations, schema validation checks and review of ITC reporting before GSTR-9 filing is recommended.
  • Any GSTR-9 schema validation error can be rectified as they are flagged even before filing the return.

Schema Validation in GSTR-9 vs Wrong GSTR-9 Filing 

a) Schema validation in GSTR-9

  • Schema validation checks whether the JSON/offline file conforms to the format prescribed by GSTN such as field length, data type, mandatory fields, HSN/GSTIN structure etc.
  • If schema validation fails, the return is not filed; the taxpayer must correct the file and re-upload, so there is no legal consequence yet beyond potential delay and late fee if filing is not completed on time.
     

b) Wrongly Filed GSTR-9

  • Once GSTR-9 passes validation and is filed, any wrong value (e.g., higher turnover, understated tax, incorrect ITC) becomes part of the official record and cannot be edited.
  • The consequences would be notices, additional tax, interest, potential penalty.
     

Why does Schema Validation Fails in GSTR-9?

There are many instances where you get schema validation failed error in GSTR-9. This could be because of the following reasons:

  • GSTIN entered is incorrect or invalid
  • Format of dates, numbers, and other data values is not as per the guidelines
  • Incorrect financial year
  • HSN codes or GST rates used for goods and services may be inaccurate or revised
  • Data entered in several GSTR-9 sections conflicts with one another

Possible Resolutions for Schema Validation Failure in GSTR-9

There­ are a handful of ways to fix a schema validation failure error in GSTR-9. First, keep an eye on the error message details. Found the error? Now, you can fix the data issues. Fill in any blank fields, validate values, and watch out for special characters. What else can you do? Ge­t your compliance software up-to-date. If the glitch hangs on, the GST helpline is ready to help you out.

Now that you know the reasons behind schema validation failed error in GSTR-9, you can seamlessly navigate the filing process. Make sure to match the format defined on the GST portal and use correct GSTIN and HSN numbers.

What you should do if you Filed GSTR‑9 Wrongly

  • Identify the nature of error: Turnover, tax liability, ITC, HSN summary, RCM or disclosure-only error.
  • Reconcile figures with GSTR‑1, GSTR‑3B, GSTR‑2B and audited financials to quantify the exact difference.
  • Where additional tax is payable or ITC needs reversal, pay via DRC‑03 with interest, clearly narrating the financial year and reason.
  • Use GSTR‑9C (if applicable) to disclose unreconciled differences and explanations, reducing litigation risk.
  • Strengthen controls for future years such as pre‑filing reconciliations, maker-checker review and automated validation to prevent repeat errors. 

Also Read:
Schema Validation Failed in GSTR-9: Reasons and Solutions
Run Time Error 13 in GSTR-9C Offline Tool: Reasons and Solutions
RET00009 Error in GSTR-9: Reasons and Solutions

Frequently Asked Questions

Can we make corrections in GSTR-9?

No, corrections cannot be made in GSTR-9 once it's filed. GSTR-9 is an annual return, and once submitted, it's considered final by the GST department and cannot be altered. However, you can write to the department and check if you can submit corrections separately.

What is the penalty for the wrong filing of GSTR-9C?

There's no specific late fee provision for GSTR-9C. It is subject to a general penalty of Rs.25,000.

How do I reverse wrongly claimed ITC in GSTR-9?

You cannot directly reverse wrongly claimed Input Tax Credit (ITC) in GSTR-9. Instead, file GSTR-9C, a reconciliation statement that helps align the figures in your GSTR-9 with those in your audited financial statements.

What is the penalty for GSTR-9?

The penalty for GSTR-9 is based on the turnover limit. For example, up to Rs.5 crore, the penalty is Rs.50 per day, with Rs.25 each for SGST and CGST.

About the Author
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Annapoorna

Assistant Manager - Content
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I preach the words, “Learning never exhausts the mind.” An aspiring CA and a passionate content writer having 4+ years of hands-on experience in deciphering jargon in Indian GST, Income Tax, off late also into the much larger Indian finance ecosystem, I love curating content in various forms to the interest of tax professionals, and enterprises, both big and small. While not writing, you can catch me singing Shāstriya Sangeetha and tuning my violin ;). Read more

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